Examples of 'query sequence' in a sentence
Meaning of "query sequence"
A structured series of requests for information or data, typically used in databases or programming to retrieve specific details or perform a sequence of actions
How to use "query sequence" in a sentence
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query sequence
It accepts a single query sequence or a multiple alignment as input.
Entries are in the approximate order of highest to lowest identity to the query sequence.
Compares a nucleotide query sequence against a nucleotide sequence database.
The output is a detailed annotation of the repeats present in a given query sequence.
The query sequence may be an entire sequence or any fragment specified as described herein.
Global comparisons force an alignment of the entire query sequence against the entire database sequence.
Compares a protein query sequence against a nucleotide sequence database dynamically translated in all reading frames.
The sequences were also used as query sequence in a BLASTX vs.
The query sequence may be the entire sequence shown in either FIG.
BLASTP compares an amino acid query sequence against a protein sequence database.
Make a k-letter word list of the query sequence.
HHpred accepts a single query sequence or a multiple alignment as input.
In other instances, the window may be defined by the query sequence.
The BLASTN program compares a nucleotide query sequence against a nucleotide sequence database.
A blast search was carried out using the sequence of mox1 as a query sequence.
See also
Next, the query sequence is threaded over known template structures.
Selection of target site for zinc finger nuclease-mediated mutagenesis of a query sequence.
Blastn - compares a nucleotide query sequence against a nucleotide sequence database.
It reports the PRESENCE of any literature-derived motif in the query sequence.
In other instances, the query sequence may constitute the shortest of the aligned sequences.
Using PSI-BLAST, a list of closely related protein sequences is created based on the query sequence.
Accordingly, such query sequence can for example be a prior art sequence or a third party sequence.
V-QUEST first generates pairwise alignments for the query sequence and each V gene segment sequence.
The result of applying ( 1 ) is a prediction score for every residue of the query sequence.
BLASTP and BLAST3 compare an amino acid query sequence against a protein sequence database ;.
If the query sequence is a cyclin D3, it will align with the known cyclin D3 sequences.
The Smith-Waterman algorithm ( 1 ) rigorously compares the query sequence with every target sequence in the database.
In another example, a 90 residue subject sequence is compared with a 100 residue query sequence.
BLASTX, Compares a nucleotide query sequence translated in all reading frames against a protein sequence database.
Repeat step 3 to 4 for each k-letter word in the query sequence.
When the 5 ' - untranslated region is used as a query sequence with FASTA on BLASTN.
In another example, a 90 nucleotide subject sequence is compared with a 100 nucleotide query sequence.
For example, a 90 base subject sequence is aligned to a 100 base query sequence to determine percent identity.
And other vertebrate homologs are generally about 65-70 % identical to the human query sequence.
All human variants are generally about 95 to about 100 % identical to the human query sequence.
The database will return the alignment of the Pfam00657 consensus sequence to the query sequence.
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