Examples of 'contig' in a sentence
Meaning of "contig"
Contig (noun): In genomics, a contig is a set of overlapping DNA segments that together represent a consensus region of DNA. Contigs are used in the process of genome assembly to reconstruct the original DNA sequence
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- A set of overlapping DNA segments, derived from a single source of genetic material, from which the complete sequence may be deduced.
How to use "contig" in a sentence
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contig
The walk has been completed and a contig of ca.
This contig can be placed on the genetic map.
The subset is sequenced and assembled to a contig.
An almost complete cosmid contig was generated over this region.
The first sequence is the reference contig.
The contig can be generated using any means known in the art.
The algorithm terminated when a complete contig was assembled.
This contig contained a significant region of upstream sequence and downstream sequence.
It was then possible to characterize other microsatellite markers in this contig.
Output from both databases includes contig accession numbers.
Another advantage is in the speed of the generation of the contig.
Several lines of evidence suggested that this contig was of particular interest.
Any new overlapping clones can then be sequenced forming a contig.
Each contig was translated in all six reading frames into protein sequences.
Subsequently these BACs are assembled in a contig for the genome.
See also
A contig is the assembly of several sequences of polynucleotides with a significant degree of overlapping.
The individual sequences of the pZerol derivatives were assembled to a continuous contig.
This process produces a contig map of the locus and is known as chromosome walking.
The initial sequences that are not included in a contig are separated out.
Generating a contig of the physical map and the sequence reads to build a genome sequence.
Homology among these sequences suggest the open reading frames of each contig.
Positioning is based on the cosmid contig constructed for the various defined regions.
The backslash in the horizontal line denotes a gap in the sequence of the contig sequence.
Wherein optionally the assembled contig has significant homology to a known viral genus or genome.
Thus we need to estimate Pcw directly from the contig.
Selected BAC clones from the contig were subcloned and sequenced.
A contig is an alignment of DNA sequences based on areas of homology among these sequences.
These genes were map in silico on the BAC contig in the tiling path.
Other genes related to the Desulfitobacterium dehalogenans cpr locus were identified in this contig.
We selected from this contig cosmids at defined positions and used these as RFLP markers.
You can use the Windows SysInternals tool Contig for this purpose.
A BAC contig that covers the entire genomic area of interest makes up the tiling path.
Note, plpgenbtldr and contig are no longer required.
The contig ID distinguishes different sequences associated with a well from a given assembly and chain type.
Genome finishing, often with a single contig.
A full-length sequence in each contig was selected for complete sequencing.
Again, positive ESTs were retrieved and added to the contig.
Here, a contig still refers to any contiguous stretch of sequence data created by read overlap.
The individual sequences of the pZero1 derivatives were assembled to a continuous contig.
Two-dimensional qualitative representations of contig and library similarities were generated based on expression profiles.
We have obtained BAC-end sequence from BACs within each contig.
This ' thin ' contig is then supplemented with the data obtained from the sequence reads.
Figure 7 is a second physical map of the region showing a minimum tiling contig.
The sequence of this contig is shown in Figure 3.
The orientation of the g7 cDNA was established by sequencing and restriction mapping to the contig.
A PAC contig over a 1 megabase region was then assembled.
The method of claim 1, further comprising determining the sequence of the assembled contig.
Does WinContig use Contig by SysInternals to perform the analysis / defragmentation process?
Annotation-based metrics are better assessments of assembly completeness, such as contig reciprocal best hit count.
Use Contig to optimize individual files, or to create new files that are contiguous.
